Indulge Guilt-Free: The Ultimate Vegan Double Chocolate Muffins with Pumpkin & Flaxseed
Prepare to have your perception of healthy baking transformed! These Vegan Double Chocolate Muffins aren’t just a treat; they’re a revelation. Imagine biting into a muffin that’s incredibly moist, profoundly fluffy, and decadently rich with not one, but two layers of chocolate—chocolate batter brimming with luscious chocolate chips—all while being entirely vegan. It sounds almost too good to be true, but this recipe delivers on every promise.
What makes these muffins truly special is their surprising blend of wholesome ingredients. We’ve harnessed the power of a whole can of pumpkin puree, not just for moisture and a delicate earthy note, but also to effortlessly use up that leftover pumpkin that often goes to waste. Paired with nutrient-dense flaxseed and lightly sweetened with just a touch of maple syrup and applesauce, these muffins strike a perfect balance of deep chocolate flavor without being cloyingly sweet. They are an indulgent experience that also happens to be packed with good-for-you ingredients. These aren’t just muffins; they’re a chocolate lover’s dream disguised as a wholesome breakfast or snack. You’ll be amazed that something so delightful is completely dairy-free and egg-free.

Why You’ll Fall in Love with These Vegan Chocolate Muffins
If you’re searching for an easy, satisfying, and wholesome breakfast option, or a decadent dessert that caters to various dietary needs, you’ve found your new go-to recipe. These double chocolate muffins are a celebration for the senses and an absolute must-make for several compelling reasons:
- Unbelievably Vegan: Despite being entirely plant-based, these muffins boast a texture and richness that rivals their traditional counterparts. They are moist, tender, and incredibly satisfying, proving that vegan baking can be utterly delicious and accessible.
- Chocolate Lover’s Paradise: Featuring both rich cacao powder in the batter and generous dark chocolate chips throughout, these muffins deliver an intense chocolate experience that will satisfy even the most ardent chocoholics.
- Wholesome & Nutrient-Rich: Beyond the delightful taste, these muffins incorporate beneficial ingredients like pumpkin puree and ground flax seeds. Pumpkin adds essential vitamins and fiber, while flaxseed contributes omega-3 fatty acids and acts as a fantastic binder, replacing eggs naturally.
- Simple & Straightforward: Made with common pantry staples, this recipe is designed for ease. With minimal steps and simple mixing, you can whip up a batch of these delectable muffins in no time, making them perfect for busy mornings or spontaneous baking sessions.
- Perfectly Balanced Sweetness: Sweetened naturally with maple syrup and applesauce, these muffins offer just the right amount of sweetness to complement the deep chocolate flavor without being overly sugary. It’s a taste that appeals to both adults and children.
- Versatile Treat: While they make an excellent breakfast or brunch item, these muffins are equally wonderful as a midday snack, a guilt-free dessert, or a lunchbox treat. Their robust flavor and satisfying texture make them suitable for any occasion.
Whether you’re new to vegan baking, looking for healthier alternatives, or simply adore chocolate, these muffins are guaranteed to become a cherished recipe in your kitchen. They’re a testament to how simple, wholesome ingredients can create something truly extraordinary.
Essential Pantry Ingredients for Pure Chocolate Bliss
One of the beauties of these Vegan Double Chocolate Muffins is their reliance on everyday pantry staples. You likely have most of these ingredients on hand, making this recipe incredibly convenient to prepare whenever a chocolate craving strikes. Each component plays a vital role in creating the perfect texture, flavor, and rise. Let’s take a closer look at the key ingredients:

- All-Purpose Flour: The foundational dry ingredient, providing structure to our muffins. For those with gluten sensitivities, a 1:1 gluten-free baking blend can be substituted successfully.
- Cacao Powder: This is where the rich, intense chocolate flavor comes from. Using high-quality cacao powder will elevate the depth of flavor in your muffins.
- Ground Flax Seeds: A vegan baking marvel! When mixed with liquid, ground flax seeds form a gel that acts as a natural binder, effectively replacing eggs and adding beneficial omega-3 fatty acids and fiber.
- Baking Soda & Baking Powder: These leavening agents are crucial for giving the muffins their airy, fluffy texture. They work in conjunction with the apple cider vinegar to create lift.
- Sea Salt: A pinch of salt enhances all the other flavors, balancing the sweetness and deepening the chocolate notes.
- Pumpkin Puree: Not just for fall! A whole 15-oz can of pumpkin puree adds incredible moisture, a subtle earthy sweetness, and a wealth of vitamins (like Vitamin A) to these muffins. It also helps create that signature tender crumb.
- Maple Syrup: Our primary natural sweetener. Maple syrup provides a delicate, caramel-like sweetness that perfectly complements the chocolate and pumpkin, while keeping the muffins refined sugar-free.
- Unsweetened Applesauce: This ingredient serves multiple purposes—it adds natural sweetness, moisture, and acts as a fat replacer, contributing to a lighter yet rich muffin.
- Almond Milk (or other Plant-Based Milk): Provides the necessary liquid to bring the batter together. Any unsweetened plant-based milk (soy, oat, cashew) will work beautifully.
- Apple Cider Vinegar: Don’t skip this! The acidity of the apple cider vinegar reacts with the baking soda, creating carbon dioxide bubbles that help the muffins rise beautifully and achieve that soft, fluffy texture.
- Dark Chocolate Chips: The “double” in double chocolate! Folded into the batter, these chips melt into gooey pockets of pure indulgence. Choose vegan-friendly dark chocolate chips to keep the recipe entirely plant-based.
Gathering these simple ingredients is the first step towards creating a batch of irresistibly delicious and wholesome vegan double chocolate muffins that everyone will adore.
Step-by-Step: Crafting Your Perfect Vegan Double Chocolate Muffins
Creating these delightful vegan double chocolate muffins is a straightforward process, making it perfect for bakers of all skill levels. Follow these simple steps to achieve a batch of moist, fluffy, and richly flavored muffins that are ready to impress.
Preparation is Key
Begin by preheating your oven to 325ºF (160ºC) if using a convection oven, or 350ºF (175ºC) for a regular bake setting. This ensures your oven is at the optimal temperature for even baking. Next, line a muffin tin with unbleached parchment paper liners. This not only prevents sticking but also makes for easy cleanup.

Step 1: Combine Dry Ingredients. In a medium-sized mixing bowl, whisk together the all-purpose flour, ground flax, cacao powder, baking powder, baking soda, and salt. Ensure these ingredients are thoroughly combined and no lumps remain, creating a uniform mixture. This step is crucial for even rising.

Step 2: Mix Until Uniform. Continue to stir the dry ingredients together, ensuring they are perfectly incorporated. This prevents pockets of unmixed leavening agents or flour, which can lead to unevenly baked muffins. A well-mixed dry base sets the stage for a perfect muffin texture.

Step 3: Whisk Wet Ingredients. In a separate bowl, combine the pumpkin puree, maple syrup, unsweetened applesauce, almond milk, and apple cider vinegar. Whisk these wet ingredients together until they are thoroughly combined and smooth. This creates a uniform liquid base that will hydrate your dry ingredients perfectly.

Step 4: Combine Wet and Dry Mixtures. Pour the wet ingredients into the bowl with the dry ingredients. Using a spatula, gently mix until just combined. The key here is to avoid overmixing, which can lead to tough muffins. A few lumps are perfectly acceptable and even desirable for a tender crumb.

Step 5: Ensure Even Incorporation. You’ll need to scrape the bottom and sides of the bowl to ensure all the flour mixture is well incorporated into the wet ingredients. Still, resist the urge to vigorously mix. Stop stirring as soon as no dry streaks of flour are visible. Overmixing develops gluten, which can make your muffins dense instead of light and fluffy.

Step 6: Fold in Chocolate Chips. Gently fold in the dark chocolate chips using your spatula. Be careful not to collapse the delicate air pockets you’ve created in the batter. The goal is to distribute the chips evenly without overworking the mixture. These chips will melt into delightful gooey pockets during baking.

Step 7: Fill Muffin Tins. Use a cookie scoop or spoon to generously fill the parchment-lined muffin tins. Distribute the batter evenly among the 12 muffin cups. Filling them generously will result in beautifully domed tops.

Step 8: Bake to Perfection. Transfer the muffin tin to your preheated oven and bake for approximately 22 minutes. To check for doneness, insert a toothpick into the center of a muffin; it should come out clean or with only a few moist crumbs attached. Avoid overbaking, as this can dry out your muffins.

Step 9: Initial Cooling. Carefully remove the muffin tin from the oven. The chocolate chips on top will be incredibly gooey and hot, so handle with care. Allow the muffins to cool slightly in the tin for a few minutes. This allows them to set up and become easier to handle.

Step 10: Complete Cooling. Gently transfer the muffins from the tin to a wire rack to finish cooling completely. Leaving them in the hot muffin tin will cause them to continue cooking and may result in a denser texture. Cooling on a rack ensures proper airflow and maintains their perfect texture.
Expert Tips for Unforgettable Vegan Muffins
Achieving perfectly moist, fluffy, and flavorful vegan muffins is an art, and with these expert tips, you’ll master it every time. These insights will help you avoid common baking pitfalls and elevate your double chocolate muffin game:

- The Magic of Leavening: The combination of baking powder, baking soda, and apple cider vinegar is what gives these vegan muffins their impressive rise and airy texture. The acid in the apple cider vinegar reacts with the baking soda, creating carbon dioxide bubbles. To preserve these precious bubbles and ensure a light crumb, resist the urge to overmix the batter. Mix until just combined; a few lumps are perfectly normal. Overmixing develops gluten, leading to tough, dense muffins.
- Optimal Oven Temperature: Ensure your oven is fully preheated to the correct temperature (325ºF convection or 350ºF regular bake) before placing the muffins inside. A hot oven helps the muffins rise quickly and sets their structure, preventing them from spreading too much.
- Don’t Rush the Cooling Process: While it’s tempting to devour these warm, gooey muffins straight from the oven, patience is a virtue here. The paper liners peel off much more easily once the muffins have had a chance to cool down. If you try to remove them too soon, parts of the muffin might stick to the liner. Allow them to cool on a wire rack for at least 15-20 minutes, or even completely, for the best experience.
- Measuring Flour Correctly: For consistent results, always measure your flour by weight using a kitchen scale. If you don’t have a scale, use the ‘spoon and level’ method: spoon the flour into your measuring cup and then level it off with the back of a knife. Scooping flour directly from the bag can compact it, leading to too much flour and dry muffins.
- The Role of Pumpkin Puree: Using a whole 15-oz can of pumpkin puree is intentional. It provides immense moisture and subtle flavor without making the muffins taste overtly like pumpkin. This is a great way to incorporate a vegetable and avoid waste from partial cans.
- Customizing Sweetness: The recipe uses maple syrup and applesauce for a balanced, natural sweetness. If you prefer a sweeter muffin, you can add an extra tablespoon or two of maple syrup, keeping in mind that this might slightly alter the liquid-to-dry ratio.
Storage and Freezing Instructions
These vegan double chocolate muffins are wonderful fresh, but they also store beautifully, making them excellent for meal prep or enjoying throughout the week:
- Room Temperature: Once completely cooled, store the muffins in an airtight container at room temperature for up to 3-5 days. This helps maintain their moisture and freshness.
- Refrigerator: For extended freshness, place the cooled muffins in an airtight container in the refrigerator for up to 1-2 weeks. Reheat gently in the microwave or oven if desired.
- Freezer: These muffins freeze exceptionally well! Once fully cooled, place them in a freezer-safe bag or airtight container. They will stay fresh for up to 3 months. Thaw individual muffins at room temperature, or warm them directly from frozen in the microwave or oven for a quick treat.
Did you find this recipe helpful? Your feedback means the world to us! If you made these delicious Vegan Double Chocolate Muffins, please consider leaving a five-star rating and a comment below to share your experience. Your support helps other bakers discover and enjoy this recipe. Don’t forget to share your amazing muffin photos on Instagram by tagging @dkhealthcoach and using the hashtag #debraklein. We can’t wait to see your creations!
📖 Recipe: Vegan Double Chocolate Flaxseed Muffins

Vegan Double Chocolate Flaxseed Muffins
Author: Debra Klein
These Vegan Double Chocolate Flaxseed Muffins are a delightful fusion of moist, fluffy texture and decadent chocolate flavor. Made with wholesome flaxseed, nutrient-rich pumpkin, and rich cacao powder, they are lightly sweetened with maple syrup and applesauce. Enjoy these perfect double chocolate muffins for breakfast, a healthy snack, or a guilt-free dessert!
Rating: 4.86 from 14 votes
Pin Recipe
Prep Time: 10 mins
Cook Time: 22 mins
Total Time: 32 mins
Course: Breakfast & Brunch
Cuisine: American
Servings: 12 muffins
Calories: 226 kcal
Equipment
- muffin tin
- parchment muffin liners
- Glass Mixing Bowls with Lids
- Cookie scoop set
Ingredients
- 3 cups all purpose flour
- â…“ cup cacao powder
- ½ cup ground flax seeds
- 1 teaspoon baking soda
- 1 teaspoon baking powder
- ¼ teaspoon sea salt
- 1 15-oz can pumpkin puree
- â…“ cup maple syrup
- ½ cup unsweetened apple sauce
- ½ cup almond milk
- 1 tblsp apple cider vinegar
- ½ cup dark chocolate chips
Instructions
- Preheat oven to 325ºF (160ºC) convection or 350ºF (175ºC) regular bake. Line muffin tin with unbleached parchment liners.
- In a medium sized mixing bowl, combine all dry ingredients (flour, cacao powder, ground flax seeds, baking soda, baking powder, sea salt). Whisk until uniformly mixed.
- In a separate bowl, mix together all wet ingredients (pumpkin puree, maple syrup, unsweetened applesauce, almond milk, apple cider vinegar). Whisk until thoroughly combined.
- Pour the wet ingredients into the dry ingredients. Use a spatula to mix until just combined, being careful to pull up any dry flour mixture from the bottom of the bowl. Avoid overmixing.
- Gently stir in the dark chocolate chips until evenly dispersed throughout the batter.
- Scoop the batter generously into the 12 parchment-lined muffin tins, ensuring even distribution.
- Bake in the preheated oven for 22 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
- Remove from oven and let cool slightly in the muffin tin before transferring to a wire rack to cool completely.
- Store muffins in an airtight container at room temperature for up to 5 days, in the refrigerator for up to 2 weeks, or freeze for up to 3 months.
Nutrition
Calories: 226 kcal
Carbohydrates: 39g
Protein: 6g
Fat: 6g
Saturated Fat: 3g
Polyunsaturated Fat: 2g
Monounsaturated Fat: 1g
Cholesterol: 0.1mg
Sodium: 201mg
Potassium: 200mg
Fiber: 4g
Sugar: 9g
Vitamin A: 17IU
Vitamin C: 0.2mg
Calcium: 90mg
Iron: 2mg
Note
The nutrition calculations were done using online tools. To obtain the most accurate representation of the nutritional information in any given recipe, you should calculate the nutritional information with the actual ingredients you used. You are ultimately responsible for ensuring that any nutritional information is accurate, complete and useful.
Did you make this recipe? Please leave a review below, then snap a picture and tag me @dkhealthcoach or use hashtag #dkhealtcoach on Instagram so I can see it!!
